Defining the Problem, Again
The power rails of the Raspberry-Pi are bought out on the GPIO header as well as the IO pins. This is both a blessing and a curse.
The advantage of this is that you have 5V and 3V3 rails available to power your circuitry that you are hooking up to your GPIO pins, but again, as the Raspberry-Pi doesn't have any protection circuitry you run the risk of killing your Raspberry-Pi through:

